If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ), 'gf_id' => 'HOM05D000754', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000754' ), 'data_identifier' => 'HOM05D000754', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000754', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '776', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01320' => 'bna', 'A02p03250' => 'bna', 'A02p15450' => 'bna', 'A02p33820' => 'bna', 'A02p37080' => 'bna', 'A02p41220' => 'bna', 'A02p44090' => 'bna', 'A03p03630' => 'bna', 'A03p07380' => 'bna', 'A03p46530' => 'bna', 'A03p65530' => 'bna', 'A06p09660' => 'bna', 'A06p39670' => 'bna', 'A06p42750' => 'bna', 'A09p07080' => 'bna', 'A09p18150' => 'bna', 'A09p24830' => 'bna', 'A09p42900' => 'bna', 'A09p62910' => 'bna', 'A10p23180' => 'bna', 'Aa31LG11G2450' => 'aar', 'Aa31LG1G1330' => 'aar', 'Aa31LG2G10600' => 'aar', 'Aa31LG2G3680' => 'aar', 'Aa31LG2G6810' => 'aar', 'Aa31LG4G18250' => 'aar', 'Aa31LG6G14610' => 'aar', 'Aa31LG7G13950' => 'aar', 'Aa31sc12G140' => 'aar', 'Actinidia07742' => 'ach', 'Actinidia18098' => 'ach', 'Actinidia18968' => 'ach', 'Actinidia26284' => 'ach', 'Actinidia35056' => 'ach', 'Ah.02g125320' => 'amhyb', 'Ah.03g138200' => 'amhyb', 'Ah.03g140650' => 'amhyb', 'Ah.10g038390' => 'amhyb', 'Ah.14g088020' => 'amhyb', 'Ah.16g100800' => 'amhyb', 'AL1G25340' => 'aly', 'AL269U10024' => 'aly', 'AL2G17540' => 'aly', 'AL2G27900' => 'aly', 'AL334U10020' => 'aly', 'AL3G41410' => 'aly', 'AL4G12430' => 'aly', 'AL5G13940' => 'aly', 'AL5G20370' => 'aly', 'AL6G18530' => 'aly', 'AL6G26700' => 'aly', 'AL7G12950' => 'aly', 'AL7G51630' => 'aly', 'AL8G37430' => 'aly', 'AL8G43580' => 'aly', 'Aqoxy3G00579' => 'aox', 'Aqoxy3G03784' => 'aox', 'Aqoxy6G02482' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01ZVMZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339DLQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.449CV2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTRU7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NS2HRD' => 'arhy', 'AT1G13600' => 'ath', 'AT1G59530' => 'ath', 'AT1G68880' => 'ath', 'AT2G04038' => 'ath', 'AT2G22850' => 'ath', 'AT3G30530' => 'ath', 'AT3G49760' => 'ath', 'AT4G37730' => 'ath', 'AT5G08141' => 'ath', 'AT5G15830' => 'ath', 'AT5G38800' => 'ath', 'AT5G60830' => 'ath', 'ATR0691G288' => 'atr', 'ATR0739G036' => 'atr', 'Atru.chr1.3765' => 'acertr', 'Atru.chr11.1506' => 'acertr', 'Atru.chr13.865' => 'acertr', 'Atru.chr3.1056' => 'acertr', 'Atru.chr6.2523' => 'acertr', 'Atru.chr8.701' => 'acertr', 'Atru.chr9.638' => 'acertr', 'AUR62004028' => 'cqu', 'AUR62007536' => 'cqu', 'AUR62007834' => 'cqu', 'AUR62007835' => 'cqu', 'AUR62009445' => 'cqu', 'AUR62012705' => 'cqu', 'AUR62021950' => 'cqu', 'AUR62021952' => 'cqu', 'AUR62023129' => 'cqu', 'BcaB01g00675' => 'bca', 'BcaB01g05023' => 'bca', 'BcaB01g05627' => 'bca', 'BcaB02g06454' => 'bca', 'BcaB02g09902' => 'bca', 'BcaB04g19891' => 'bca', 'BcaB04g19892' => 'bca', 'BcaB04g20212' => 'bca', 'BcaB05g23150' => 'bca', 'BcaB05g24427' => 'bca', 'BcaB07g30063' => 'bca', 'BcaB07g30270' => 'bca', 'BcaB07g30640' => 'bca', 'BcaB08g34316' => 'bca', 'BcaB08g36864' => 'bca', 'BcaC01g02827' => 'bca', 'BcaC03g15010' => 'bca', 'BcaC03g17265' => 'bca', 'BcaC03g18047' => 'bca', 'BcaC03g18357' => 'bca', 'BcaC03g18453' => 'bca', 'BcaC03g18454' => 'bca', 'BcaC04g18931' => 'bca', 'BcaC04g21432' => 'bca', 'BcaC04g22164' => 'bca', 'BcaC04g23478' => 'bca', 'BcaC05g25255' => 'bca', 'BcaC05g25256' => 'bca', 'BcaC06g30843' => 'bca', 'BcaC06g31135' => 'bca', 'BcaC06g33197' => 'bca', 'BcaC06g33372' => 'bca', 'BcaC06g33726' => 'bca', 'BcaC06g33983' => 'bca', 'BcaC07g39440' => 'bca', 'BcaC07g41632' => 'bca', 'BcaC09g49969' => 'bca', 'BcaNung02206' => 'bca', 'BcaNung02619' => 'bca', 'BcaNung05760' => 'bca', 'BcaNung05788' => 'bca', 'BolC1t00145H' => 'bol', 'BolC1t03000H' => 'bol', 'BolC2t06723H' => 'bol', 'BolC2t08621H' => 'bol', 'BolC2t11291H' => 'bol', 'BolC2t11663H' => 'bol', 'BolC2t12159H' => 'bol', 'BolC2t12498H' => 'bol', 'BolC3t12943H' => 'bol', 'BolC3t13350H' => 'bol', 'BolC3t13351H' => 'bol', 'BolC3t13363H' => 'bol', 'BolC3t18244H' => 'bol', 'BolC5t29887H' => 'bol', 'BolC7t43965H' => 'bol', 'BolC7t44383H' => 'bol', 'BolC7t44980H' => 'bol', 'BolC8t50093H' => 'bol', 'BolC8t52183H' => 'bol', 'BolC9t53706H' => 'bol', 'BolC9t55180H' => 'bol', 'BolC9t56039H' => 'bol', 'BolC9t58965H' => 'bol', 'BraA01t00129Z' => 'bra', 'BraA02t05296Z' => 'bra', 'BraA02t06606Z' => 'bra', 'BraA02t08400Z' => 'bra', 'BraA02t08694Z' => 'bra', 'BraA02t09065Z' => 'bra', 'BraA02t09332Z' => 'bra', 'BraA03t09711Z' => 'bra', 'BraA03t10062Z' => 'bra', 'BraA03t13777Z' => 'bra', 'BraA06t24156Z' => 'bra', 'BraA06t26882Z' => 'bra', 'BraA06t27188Z' => 'bra', 'BraA09t36357Z' => 'bra', 'BraA09t36358Z' => 'bra', 'BraA09t37448Z' => 'bra', 'BraA09t38067Z' => 'bra', 'BraA09t39758Z' => 'bra', 'BraA09t41648Z' => 'bra', 'BraA10t44387Z' => 'bra', 'C01p01480' => 'bna', 'C01p30640' => 'bna', 'C02p08010' => 'bna', 'C02p25560' => 'bna', 'C02p52060' => 'bna', 'C02p56080' => 'bna', 'C02p61100' => 'bna', 'C02p64350' => 'bna', 'C03p04110' => 'bna', 'C03p08460' => 'bna', 'C03p08600' => 'bna', 'C03p59810' => 'bna', 'C05p11360' => 'bna', 'C07p34340' => 'bna', 'C07p38620' => 'bna', 'C07p44590' => 'bna', 'C07p62610' => 'bna', 'C08p24780' => 'bna', 'C08p46340' => 'bna', 'C09p07940' => 'bna', 'C09p22630' => 'bna', 'C09p31830' => 'bna', 'C09p61230' => 'bna', 'CAN.G1239.10' => 'can', 'CAN.G184.9' => 'can', 'CAN.G497.38' => 'can', 'CAN.G73.5' => 'can', 'CANSAT01G0483' => 'cansat', 'CANSAT25G1263' => 'cansat', 'CANSAT64G0760' => 'cansat', 'CANSAT64G1826' => 'cansat', 'CANSAT80G0614' => 'cansat', 'CARHR013930' => 'chi', 'CARHR061740' => 'chi', 'CARHR114160' => 'chi', 'CARHR146440' => 'chi', 'CARHR153500' => 'chi', 'CARHR158850' => 'chi', 'CARHR197490' => 'chi', 'CARHR205040' => 'chi', 'CARHR246120' => 'chi', 'CARHR263860' => 'chi', 'CARHR274510' => 'chi', 'CARHR279860' => 'chi', 'CARHR283840' => 'chi', 'Carub.0001s1328' => 'cru', 'Carub.0002s0590' => 'cru', 'Carub.0002s1548' => 'cru', 'Carub.0004s0198' => 'cru', 'Carub.0005s0324' => 'cru', 'Carub.0005s0865' => 'cru', 'Carub.0005s1612' => 'cru', 'Carub.0006s0704' => 'cru', 'Carub.0006s1399' => 'cru', 'Carub.0007s0252' => 'cru', 'Carub.0007s3706' => 'cru', 'Carub.0008s2153' => 'cru', 'Carub.0008s2675' => 'cru', 'Ca_05159_v3' => 'car', 'Ca_20752_v3' => 'car', 'Ca_21747_v3' => 'car', 'Ca_22096_v3' => 'car', 'Ca_23553_v3' => 'car', 'Ca_29802_v3' => 'car', 'CBR_g8959' => 'cbr', 'Cc07_g04710' => 'ccan', 'Cc07_g07330' => 'ccan', 'Cc10_g07580' => 'ccan', 'Cc11_g11290' => 'ccan', 'CDE01G0504' => 'cde', 'Cfa004385' => 'cfa', 'Cfa007722' => 'cfa', 'Cfa008820' => 'cfa', 'Cfa013747' => 'cfa', 'Ciclev10002805m.g' => 'ccl', 'Ciclev10013334m.g' => 'ccl', 'Ciclev10024105m.g' => 'ccl', 'Ciclev10027584m.g' => 'ccl', 'Ciclev10032777m.g' => 'ccl', 'CiPaw.01G002300' => 'cil', 'CiPaw.03G080600' => 'cil', 'CiPaw.04G050700' => 'cil', 'CiPaw.05G119300' => 'cil', 'CiPaw.06G096500' => 'cil', 'CiPaw.07G172500' => 'cil', 'CiPaw.08G051900' => 'cil', 'CiPaw.15G116000' => 'cil', 'ClCG01G007390' => 'cla', 'ClCG01G017780' => 'cla', 'ClCG05G023370' => 'cla', 'ClCG05G026580' => 'cla', 'ClCG07G016170' => 'cla', 'ClCG08G004850' => 'cla', 'ClCG08G016680' => 'cla', 'ClCG11G005070' => 'cla', 'COL.COLO4_11611' => 'col', 'COL.COLO4_25886' => 'col', 'COL.COLO4_27760' => 'col', 'COL.COLO4_28469' => 'col', 'COL.COLO4_28833' => 'col', 'Cpa.g.sc129.74' => 'cpa', 'Cpa.g.sc142.59' => 'cpa', 'Cpa.g.sc3.213' => 'cpa', 'Cpa.g.sc53.3' => 'cpa', 'Cpa.g.sc70.1' => 'cpa', 'CsaV3_2G025950' => 'csa', 'CsaV3_4G009880' => 'csa', 'CsaV3_5G018860' => 'csa', 'CsaV3_5G033640' => 'csa', 'CsaV3_5G038820' => 'csa', 'CsaV3_6G044300' => 'csa', 'CSS0003669' => 'camsi', 'CSS0006079' => 'camsi', 'CSS0007195' => 'camsi', 'CSS0013719' => 'camsi', 'CSS0015963' => 'camsi', 'CSS0026493' => 'camsi', 'CSS0034114' => 'camsi', 'CSS0039675' => 'camsi', 'DCAR_002023' => 'dca', 'DCAR_007210' => 'dca', 'DCAR_007539' => 'dca', 'DCAR_010801' => 'dca', 'DCAR_010997' => 'dca', 'DCAR_020060' => 'dca', 'DCAR_025821' => 'dca', 'DCAR_030068' => 'dca', 'Dinv15556' => 'din', 'Dinv16576' => 'din', 'Dinv23041' => 'din', 'Dinv26956' => 'din', 'Dinv34888' => 'din', 'Duzib041G0285' => 'dzi', 'Duzib068G0124' => 'dzi', 'Duzib093G0192' => 'dzi', 'Duzib116G0351' => 'dzi', 'Duzib133G1197' => 'dzi', 'Duzib138G1070' => 'dzi', 'Duzib147G0338' => 'dzi', 'Duzib187G1715' => 'dzi', 'Duzib205G1066' => 'dzi', 'Duzib211G0554' => 'dzi', 'Duzib248G0281' => 'dzi', 'Duzib251G0857' => 'dzi', 'Duzib264G0179' => 'dzi', 'Duzib268G1520' => 'dzi', 'ECA232G0212' => 'eca', 'ECA233G6166' => 'eca', 'ECA234G4450' => 'eca', 'ECA246G0653' => 'eca', 'ECA246G1154' => 'eca', 'EL10Ac2g04403' => 'bvu', 'EL10Ac6g14623' => 'bvu', 'EL10Ac6g14624' => 'bvu', 'EL10Ac8g20053' => 'bvu', 'Eucgr.H02330' => 'egr', 'Eucgr.I02090' => 'egr', 'Eucgr.J01431' => 'egr', 'Eucgr.K02632' => 'egr', 'FAN02G2472' => 'fan', 'FAN02G2810' => 'fan', 'FAN05G0125' => 'fan', 'FAN05G2190' => 'fan', 'FAN05G2993' => 'fan', 'FAN06G0019' => 'fan', 'FAN06G3245' => 'fan', 'FAN07G2366' => 'fan', 'FAN08G0941' => 'fan', 'FAN09G3817' => 'fan', 'FAN12G0037' => 'fan', 'FAN13G0812' => 'fan', 'FAN14G2119' => 'fan', 'FAN14G4628' => 'fan', 'FAN15G3208' => 'fan', 'FAN17G1998' => 'fan', 'FAN18G1320' => 'fan', 'FAN19G0912' => 'fan', 'FAN22G1884' => 'fan', 'FAN23G2905' => 'fan', 'FAN24G2662' => 'fan', 'FAN26G0075' => 'fan', 'FAN27G2773' => 'fan', 'FAN28G2566' => 'fan', 'FvH4_2g32711' => 'fve', 'FvH4_4g28780' => 'fve', 'FvH4_5g13260' => 'fve', 'FvH4_6g20610' => 'fve', 'FvH4_6g46000' => 'fve', 'Glyma.01G069300' => 'gma', 'Glyma.01G195800' => 'gma', 'Glyma.02G126100' => 'gma', 'Glyma.05G017400' => 'gma', 'Glyma.05G108200' => 'gma', 'Glyma.06G048500' => 'gma', 'Glyma.08G254400' => 'gma', 'Glyma.11G045900' => 'gma', 'Glyma.13G050700' => 'gma', 'Glyma.14G089066' => 'gma', 'Glyma.17G158900' => 'gma', 'Glyma.18G277100' => 'gma', 'Glyma.19G037900' => 'gma', 'Gohir.A01G123450' => 'ghi', 'Gohir.A02G149900' => 'ghi', 'Gohir.A03G107700' => 'ghi', 'Gohir.A05G211800' => 'ghi', 'Gohir.A07G177900' => 'ghi', 'Gohir.A08G052100' => 'ghi', 'Gohir.A09G054200' => 'ghi', 'Gohir.A11G048900' => 'ghi', 'Gohir.A12G078400' => 'ghi', 'Gohir.A12G080000' => 'ghi', 'Gohir.A12G158400' => 'ghi', 'Gohir.A12G184400' => 'ghi', 'Gohir.A13G093000' => 'ghi', 'Gohir.D01G111266' => 'ghi', 'Gohir.D02G132700' => 'ghi', 'Gohir.D03G030500' => 'ghi', 'Gohir.D05G215100' => 'ghi', 'Gohir.D07G185300' => 'ghi', 'Gohir.D08G061700' => 'ghi', 'Gohir.D09G053300' => 'ghi', 'Gohir.D11G052500' => 'ghi', 'Gohir.D12G076600' => 'ghi', 'Gohir.D12G076700' => 'ghi', 'Gohir.D12G161500' => 'ghi', 'Gohir.D12G187100' => 'ghi', 'Gohir.D13G099500' => 'ghi', 'Gorai.001G205800' => 'gra', 'Gorai.001G251000' => 'gra', 'Gorai.002G135900' => 'gra', 'Gorai.003G032100' => 'gra', 'Gorai.004G063800' => 'gra', 'Gorai.005G148600' => 'gra', 'Gorai.006G054500' => 'gra', 'Gorai.007G056900' => 'gra', 'Gorai.008G085200' => 'gra', 'Gorai.008G085300' => 'gra', 'Gorai.008G174500' => 'gra', 'Gorai.008G200600' => 'gra', 'Gorai.009G221800' => 'gra', 'GSVIVG01010152001' => 'vvi', 'GSVIVG01036509001' => 'vvi', 'HanXRQChr07g0189251' => 'han', 'HanXRQChr09g0255311' => 'han', 'HanXRQChr09g0263241' => 'han', 'HanXRQChr11g0323011' => 'han', 'HanXRQChr12g0364561' => 'han', 'HanXRQChr12g0376421' => 'han', 'HanXRQChr12g0380111' => 'han', 'HanXRQChr14g0445391' => 'han', 'HanXRQChr15g0475641' => 'han', 'HanXRQChr15g0475651' => 'han', 'HanXRQChr15g0489891' => 'han', 'HanXRQChr16g0528301' => 'han', 'HanXRQChr17g0550771' => 'han', 'HanXRQChr17g0568691' => 'han', 'Haze_11832' => 'cav', 'Haze_14352' => 'cav', 'Haze_15028' => 'cav', 'Hma1.2p1_0424F.1_g150490' => 'hma', 'Hma1.2p1_0588F.1_g184570' => 'hma', 'Hma1.2p1_0762F.1_g214420' => 'hma', 'Hma1.2p1_1139F.1_g260890' => 'hma', 'Hma1.2p1_1170F.1_g263430' => 'hma', 'Hma1.2p1_1874F.1_g306250' => 'hma', 'Hma1.2p1_2551F.1_g324260' => 'hma', 'HPP92_001850' => 'vpl', 'HPP92_007710' => 'vpl', 'HPP92_014018' => 'vpl', 'HPP92_015517' => 'vpl', 'HPP92_015558' => 'vpl', 'HPP92_015704' => 'vpl', 'HPP92_019632' => 'vpl', 'HPP92_026658' => 'vpl', 'Lalb_Chr02g0158621' => 'lal', 'Lalb_Chr04g0255291' => 'lal', 'Lalb_Chr06g0174801' => 'lal', 'Lalb_Chr09g0323741' => 'lal', 'Lalb_Chr10g0092521' => 'lal', 'Lalb_Chr10g0099381' => 'lal', 'Lalb_Chr11g0063011' => 'lal', 'Lalb_Chr13g0302631' => 'lal', 'Lalb_Chr14g0368081' => 'lal', 'Lalb_Chr16g0378971' => 'lal', 'Lalb_Chr21g0318101' => 'lal', 'Lalb_Chr22g0355761' => 'lal', 'Lj1g0000152' => 'lja', 'Lj1g0024809' => 'lja', 'Lj2g0006680' => 'lja', 'Lj2g0020358' => 'lja', 'Lj2g0020906' => 'lja', 'Lj3P1024T66' => 'lonja', 'Lj4C74T8' => 'lonja', 'Lj4g0006564' => 'lja', 'Lj4g0013214' => 'lja', 'Lj4P127T31' => 'lonja', 'Lj4P165T20' => 'lonja', 'Lj5g0022298' => 'lja', 'Lj6P772T14' => 'lonja', 'Lj7P112T12' => 'lonja', 'Lju361C12T1' => 'lonja', 'Lsat_1_v5_gn_2_80220' => 'lsa', 'Lsat_1_v5_gn_3_105781' => 'lsa', 'Lsat_1_v5_gn_3_86301' => 'lsa', 'Lsat_1_v5_gn_3_95361' => 'lsa', 'Lsat_1_v5_gn_3_95540' => 'lsa', 'Lsat_1_v5_gn_4_159740' => 'lsa', 'Lsat_1_v5_gn_4_174860' => 'lsa', 'Lsat_1_v5_gn_4_21421' => 'lsa', 'Lsat_1_v5_gn_6_108501' => 'lsa', 'Lsat_1_v5_gn_6_110480' => 'lsa', 'Lsat_1_v5_gn_9_77540' => 'lsa', 'Manes.01G105400' => 'mes', 'Manes.02G061900' => 'mes', 'Manes.05G183200' => 'mes', 'Manes.06G078000' => 'mes', 'Manes.06G079700' => 'mes', 'Manes.12G117300' => 'mes', 'Manes.13G109400' => 'mes', 'Manes.14G092600' => 'mes', 'Manes.18G049100' => 'mes', 'MBI14_g37523_MAGBIO' => 'mbi', 'MBI15_g24992_MAGBIO' => 'mbi', 'MBI16_g45152_MAGBIO' => 'mbi', 'MD02G1189300' => 'mdo', 'MD06G1206800' => 'mdo', 'MD08G1078800' => 'mdo', 'MD09G1078300' => 'mdo', 'MD13G1053800' => 'mdo', 'MD15G1065800' => 'mdo', 'MD15G1300200' => 'mdo', 'MD16G1052300' => 'mdo', 'MD17G1068700' => 'mdo', 'Medtr1g017570' => 'mtr', 'Medtr3g103360' => 'mtr', 'Medtr4g097440' => 'mtr', 'Medtr5g015090' => 'mtr', 'Medtr6g016375' => 'mtr', 'Medtr7g017880' => 'mtr', 'Medtr7g029400' => 'mtr', 'Medtr8g015250' => 'mtr', 'MELO3C005173.2' => 'cme', 'MELO3C007655.2' => 'cme', 'MELO3C010788.2' => 'cme', 'MELO3C011668.2' => 'cme', 'MELO3C012181.2' => 'cme', 'MELO3C016835.2' => 'cme', 'MELO3C018916.2' => 'cme', 'MELO3C022062.2' => 'cme', 'Migut.H00326' => 'egut', 'Migut.H00570' => 'egut', 'Migut.K00877' => 'egut', 'Migut.L01138' => 'egut', 'Migut.O00824' => 'egut', 'MSTRG.13478' => 'ama', 'MSTRG.15428' => 'ama', 'MSTRG.22210' => 'ama', 'MSTRG.23849' => 'ama', 'MSTRG.2807' => 'ama', 'MSTRG.3382' => 'ama', 'MSTRG.3481' => 'ama', 'MSTRG.7714' => 'ama', 'MSTRG.796' => 'ama', 'Nitab4.5_0000027g0550' => 'nta', 'Nitab4.5_0000149g0170' => 'nta', 'Nitab4.5_0000154g0070' => 'nta', 'Nitab4.5_0001397g0020' => 'nta', 'Nitab4.5_0002171g0070' => 'nta', 'Nitab4.5_0006272g0010' => 'nta', 'Nitab4.5_0006965g0010' => 'nta', 'Nitab4.5_0009468g0030' => 'nta', 'Nitab4.5_0011122g0010' => 'nta', 'Nn3g17590' => 'nnu', 'Nn4g23591' => 'nnu', 'Nn4g23593' => 'nnu', 'Nn5g30657' => 'nnu', 'Nn6g34519' => 'nnu', 'Oeu013337.1' => 'oeu', 'Oeu019292.1' => 'oeu', 'Oeu021814.1' => 'oeu', 'Oeu024140.1' => 'oeu', 'Oeu032432.1' => 'oeu', 'Oeu032433.1' => 'oeu', 'Oeu032847.1' => 'oeu', 'Oeu033308.1' => 'oeu', 'Oeu040621.1' => 'oeu', 'Oeu049343.1' => 'oeu', 'Oeu053639.1' => 'oeu', 'Oeu062195.1' => 'oeu', 'Os02g0191600' => 'osa', 'Os02g0728001' => 'osa', 'Os08g0487100' => 'osa', 'Os09g0474000' => 'osa', 'Peaxi162Scf00020g02019' => 'pax', 'Peaxi162Scf00188g00066' => 'pax', 'Peaxi162Scf00479g01010' => 'pax', 'Peaxi162Scf00548g00014' => 'pax', 'PGR004G0996' => 'pgr', 'PGR004G2429' => 'pgr', 'PGR031G3757' => 'pgr', 'PGR042G0306' => 'pgr', 'PGR044G1879' => 'pgr', 'PGR102G1633' => 'pgr', 'PGR102G3091' => 'pgr', 'PGSC0003DMG400001387' => 'stu', 'PGSC0003DMG400001916' => 'stu', 'PGSC0003DMG400004916' => 'stu', 'PGSC0003DMG400007523' => 'stu', 'Phvul.001G029500' => 'pvu', 'Phvul.002G009200' => 'pvu', 'Phvul.002G110600' => 'pvu', 'Phvul.003G181500' => 'pvu', 'Phvul.003G233200' => 'pvu', 'Phvul.004G045800' => 'pvu', 'Phvul.008G023800' => 'pvu', 'Phvul.009G073800' => 'pvu', 'Phvul.009G204300' => 'pvu', 'Potri.002G115900' => 'ptr', 'Potri.004G111100' => 'ptr', 'Potri.007G006900' => 'ptr', 'Potri.008G113400' => 'ptr', 'Potri.010G135200' => 'ptr', 'Potri.014G007100' => 'ptr', 'Potri.014G013400' => 'ptr', 'Potri.015G047700' => 'ptr', 'Potri.017G106700' => 'ptr', 'PRCOL_00000407' => 'pco', 'Prupe.1G298200' => 'ppe', 'Prupe.1G419700' => 'ppe', 'Prupe.3G246000' => 'ppe', 'Prupe.5G211200' => 'ppe', 'Prupe.6G217300' => 'ppe', 'Psat0ss26165g0040' => 'psa', 'Psat1g064080' => 'psa', 'Psat2g081360' => 'psa', 'Psat2g172480' => 'psa', 'Psat3g194240' => 'psa', 'Psat5g045080' => 'psa', 'Psat6g017520' => 'psa', 'PSO017G0160' => 'pso', 'PSO063G2782' => 'pso', 'PSO478G1595' => 'pso', 'PSO541G5281' => 'pso', 'PSO675G1645' => 'pso', 'PSO782G1028' => 'pso', 'QL02p063727' => 'qlo', 'QL03p047355' => 'qlo', 'QL06p038974' => 'qlo', 'QL12p038475' => 'qlo', 'QL12p038504' => 'qlo', 'RcHm_v2.0_Chr2g0108691' => 'rch', 'RcHm_v2.0_Chr2g0164231' => 'rch', 'RcHm_v2.0_Chr3g0476411' => 'rch', 'RcHm_v2.0_Chr4g0436911' => 'rch', 'RcHm_v2.0_Chr6g0309961' => 'rch', 'Rhsim08G0090600' => 'rsi', 'Rhsim08G0091200' => 'rsi', 'Rhsim09G0118000' => 'rsi', 'Rhsim10G0061200' => 'rsi', 'Rhsim12G0147000' => 'rsi', 'Sabra04G0073300' => 'sbr', 'Sabra07G0005200' => 'sbr', 'Sabra10G0103800' => 'sbr', 'Sabra14G0006500' => 'sbr', 'Sabra14G0008200' => 'sbr', 'Sabra15G0079300' => 'sbr', 'Sabra17G0089600' => 'sbr', 'SalBow1G5412' => 'sbo', 'SalBow1G7982' => 'sbo', 'SalBow2G1956' => 'sbo', 'SalBow3G0289' => 'sbo', 'SalBow8G0914' => 'sbo', 'Sc02g0008100' => 'sci', 'Sc04g0007180' => 'sci', 'Sc04g0007190' => 'sci', 'Sc07g0000450' => 'sci', 'Sc10g0000460' => 'sci', 'Sed0000386' => 'sed', 'Sed0006116' => 'sed', 'Sed0010484' => 'sed', 'Sed0012396' => 'sed', 'Sed0014710' => 'sed', 'Sed0016295' => 'sed', 'Sed0018678' => 'sed', 'Sed0020432' => 'sed', 'Sed0021930' => 'sed', 'Sed0026636' => 'sed', 'SEGI_01027' => 'sgi', 'SEGI_41264' => 'sgi', 'SGA_v2.0_scaffold152G36829' => 'sas', 'SGA_v2.0_scaffold15G07496' => 'sas', 'SGA_v2.0_scaffold16G07846' => 'sas', 'SGA_v2.0_scaffold174G39221' => 'sas', 'SGA_v2.0_scaffold287G47210' => 'sas', 'SGA_v2.0_scaffold36G14498' => 'sas', 'SGA_v2.0_scaffold4G02347' => 'sas', 'SGA_v2.0_scaffold52G19045' => 'sas', 'SHI08442' => 'shi', 'Solyc02g089420.1' => 'sly', 'Solyc03g046440.3' => 'sly', 'Solyc04g005170.1' => 'sly', 'Solyc05g010516.1' => 'sly', 'Sopen02g034180' => 'spe', 'Sopen03g010660' => 'spe', 'Sopen04g001180' => 'spe', 'Sopen04g031190' => 'spe', 'Sopen05g006290' => 'spe', 'Sp1g11980' => 'spa', 'Sp2g05020' => 'spa', 'Sp2g14790' => 'spa', 'Sp2g18200' => 'spa', 'Sp2g24150' => 'spa', 'Sp2g28950' => 'spa', 'Sp4g01890' => 'spa', 'Sp5g12320' => 'spa', 'Sp6g28280' => 'spa', 'Sp7g03140' => 'spa', 'Sp7g35380' => 'spa', 'SpUn0042_0040' => 'spa', 'TAR371G0899' => 'tar', 'TAR374G1296' => 'tar', 'TAR376G1084' => 'tar', 'TAR622G0833' => 'tar', 'TAR628G1392' => 'tar', 'TAR629G0533' => 'tar', 'THA.LOC104800974' => 'tha', 'THA.LOC104801839' => 'tha', 'THA.LOC104802988' => 'tha', 'THA.LOC104804197' => 'tha', 'THA.LOC104805225' => 'tha', 'THA.LOC104805539' => 'tha', 'THA.LOC104816762' => 'tha', 'THA.LOC104818363' => 'tha', 'THA.LOC104819272' => 'tha', 'THA.LOC104820972' => 'tha', 'THA.LOC104822533' => 'tha', 'THA.LOC104822719' => 'tha', 'THA.LOC104824045' => 'tha', 'THA.LOC104827146' => 'tha', 'THA.LOC104827731' => 'tha', 'Thecc.01G075900' => 'tca', 'Thecc.02G318700' => 'tca', 'Thecc.03G110700' => 'tca', 'Thecc.04G111400' => 'tca', 'Thecc.08G085100' => 'tca', 'Thhalv10000309m.g' => 'esa', 'Thhalv10005000m.g' => 'esa', 'Thhalv10005347m.g' => 'esa', 'Thhalv10005352m.g' => 'esa', 'Thhalv10005423m.g' => 'esa', 'Thhalv10008825m.g' => 'esa', 'Thhalv10010997m.g' => 'esa', 'Thhalv10015835m.g' => 'esa', 'Thhalv10019568m.g' => 'esa', 'Thhalv10023854m.g' => 'esa', 'Thhalv10027117m.g' => 'esa', 'Thhalv10028235m.g' => 'esa', 'TPR.G15933' => 'tpr', 'TPR.G2650' => 'tpr', 'TPR.G28779' => 'tpr', 'TPR.G30196' => 'tpr', 'TPR.G3247' => 'tpr', 'TPR.G3728' => 'tpr', 'TPR.G9335' => 'tpr', 'TWI31G1254' => 'twi', 'TWI34G1117' => 'twi', 'TWI56G1432' => 'twi', 'TWI60G0987' => 'twi', 'TWI74G1229' => 'twi', 'TWI75G1011' => 'twi', 'TWI79G1741' => 'twi', 'unitig_22.g6535' => 'ugi', 'unitig_52.g17604' => 'ugi', 'unitig_52.g17629' => 'ugi', 'unitig_62.g23395' => 'ugi', 'unitig_62.g23429' => 'ugi', 'unitig_8.g4868' => 'ugi', 'unitig_899.g15117' => 'ugi', 'vmacro10454' => 'vma', 'vmacro18014' => 'vma', 'vmacro23300' => 'vma', 'vmacro23468' => 'vma', 'VMungo0251G0820' => 'vmu', 'VMungo0464G1909' => 'vmu', 'VMungo0647G1860' => 'vmu', 'VMungo1215G0218' => 'vmu', 'VMungo1215G0337' => 'vmu', 'VMungo1215G2217' => 'vmu', 'VMungo1309G1385' => 'vmu', 'VMungo1383G0648' => 'vmu', 'Zm00001eb033630' => 'zma', 'Zm00001eb101350' => 'zma', 'Zm00001eb189840' => 'zma', 'Zm00001eb199200' => 'zma', 'Zm00001eb206320' => 'zma', 'Zm00001eb235050' => 'zma', 'Zm00001eb253370' => 'zma', 'Zm00001eb280800' => 'zma', 'Zm00001eb315850' => 'zma' ) $gf_id = 'HOM05D000754' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000754' ) $data_identifier = 'HOM05D000754' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 43, 'aar' => (int) 9, 'ach' => (int) 5, 'amhyb' => (int) 6, 'aly' => (int) 15, 'aox' => (int) 3, 'arhy' => (int) 5, 'ath' => (int) 12, 'atr' => (int) 2, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 41, 'bol' => (int) 23, 'bra' => (int) 20, 'can' => (int) 4, 'cansat' => (int) 5, 'chi' => (int) 13, 'cru' => (int) 13, 'car' => (int) 6, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 24, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 26, 'gra' => (int) 13, 'vvi' => (int) 2, 'han' => (int) 14, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 8, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 9, 'mbi' => (int) 3, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 9, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 7, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 6, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 12, 'tar' => (int) 6, 'tha' => (int) 15, 'tca' => (int) 5, 'esa' => (int) 12, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315850' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1